ALGAE Protocol: Later life, comparing cleaned vs uncleaned mobility assessments

An automated protocol for assigning early life exposures to longitudinal cohort studies

ALGAE Protocol: Later life, comparing cleaned vs uncleaned mobility assessments (algae4700 - algae4716)

by Kevin Garwood

Context of Variables

These variables compare later life exposures generated by the cleaned mobility assessment and uncleaned mobility assessment methods. Percent error values for cumulative, average and median exposure values are calculated for each pollutant (NAME, NOX_rd, PM10_rd, PM10_gr, PM10_tot) for each life stage (T1, T2, T3, EL) for each person.

The formula used to calculate percent error is: 
percent_error = (|approximate - exact| / exact) x 100

For these variables, ALGAE uses the cleaned mobility assessment to provide exact values and the uncleaned mobility assessment to provide approximate values. The formula becomes: 

percent_error = (|uncleaned value - cleaned value| / cleaned value) x 100

See Calculations and Algorithms to find out more about percent error calculations.

Location of Result File

You will find these variables in a file having a name that fits the form: 
res_later_mob_cln_vs_uncln_[Date stamp].csv
which will be found in the directory: 
later_life/results/exposure_data/method_comparisons

Example Result File

See here.

Variable Naming Conventions

It may be quicker to understand the variables through naming conventions rather than looking at specific table entries. The basic format of variables in this section follows this pattern: 
	algae47[0-16]_[pollution type]_[aggregate value]_percent_err

In this pattern:

  • algae47: indicates that they refer to comparing exposures that compare results between the cleaned mobility assessment and uncleaned mobility assessments.
  • pollution_type: will be name, nox_rd, pm10_tot, pm10_rd, pm10_gr
  • aggregate value: sum for cumulative value, avg for average value and med for median value.

The pollutant codes have the following meanings:

  • name: high level pollution that comes from outside the exposure area
  • nox_rd: Nitrogen oxide pollution coming from roads
  • pm10_rd: PM10 particulate matter coming from roads.
  • pm10_gr: PM10 particulate matter coming from sources other than roads.
  • pm10_tot: PM10 particulate matter coming from either roads or other sources.

Variable Dictionary

Variable Description
algae4700_person_id An anonymised or pseudonymised identifier which represents a study member. ALGAE uses this variable to link data together for a given study member.
algae4701_life_stage The name of a life stage. For example, "T1" may be the name of the Trimester 1 life stage.
algae4702_name_sum_percent_err The percent error for cumulative NAME exposure. The cleaned mobility assessment provides the exact value and the uncleaned mobility assessment provides the approximate value.
algae4703_name_avg_percent_err The percent error for average NAME exposure. The cleaned mobility assessment provides the exact value and the uncleaned mobility assessment provides the approximate value.
algae4704_name_med_percent_err The percent error for median NAME exposure. The cleaned mobility assessment provides the exact value and the uncleaned mobility assessment provides the approximate value.
algae4705_nox_rd_sum_percent_err The percent error for cumulative NOX_rd exposure. The cleaned mobility assessment provides the exact value and the uncleaned mobility assessment provides the approximate value.
algae4706_nox_rd_avg_percent_err The percent error for average NOX_rd exposure. The cleaned mobility assessment provides the exact value and the uncleaned mobility assessment provides the approximate value.
algae4707_nox_rd_med_percent_err The percent error for median NOX_rd exposure. The cleaned mobility assessment provides the exact value and the uncleaned mobility assessment provides the approximate value.
algae4708_pm10_gr_sum_percent_err The percent error for cumulative PM10_gr exposure. The cleaned mobility assessment provides the exact value and the uncleaned mobility assessment provides the approximate value.
algae4709_pm10_gr_avg_percent_err The percent error for average PM10_gr exposure. The cleaned mobility assessment provides the exact value and the uncleaned mobility assessment provides the approximate value.
algae4710_pm10_gr_med_percent_err The percent error for median PM10_gr exposure. The cleaned mobility assessment provides the exact value and the uncleaned mobility assessment provides the approximate value.
algae4711_pm10_rd_sum_percent_err The percent error for cumulative PM10_rd exposure. The cleaned mobility assessment provides the exact value and the uncleaned mobility assessment provides the approximate value.
algae4712_pm10_rd_avg_percent_err The percent error for average PM10_rd exposure. The cleaned mobility assessment provides the exact value and the uncleaned mobility assessment provides the approximate value.
algae4713_pm10_rd_med_percent_err The percent error for median PM10_rd exposure. The cleaned mobility assessment provides the exact value and the uncleaned mobility assessment provides the approximate value.
algae4714_pm10_tot_sum_percent_err The percent error for cumulative PM10_tot exposure. The cleaned mobility assessment provides the exact value and the uncleaned mobility assessment provides the approximate value.
algae4715_pm10_tot_avg_percent_err The percent error for average PM10_tot exposure. The cleaned mobility assessment provides the exact value and the uncleaned mobility assessment provides the approximate value.
algae4716_pm10_tot_med_diff The percent error for median PM10_tot exposure. The cleaned mobility assessment provides the exact value and the uncleaned mobility assessment provides the approximate value.